PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25033_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 72aa    MW: 8628.97 Da    PI: 9.6842
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25033_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-181972352
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR
  RrC25033_p1 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRR 72
                 5679*************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.4631472IPR001356Homeobox domain
SMARTSM003895.5E-51672IPR001356Homeobox domain
SuperFamilySSF466891.11E-151872IPR009057Homeodomain-like
PfamPF000467.5E-161972IPR001356Homeobox domain
CDDcd000869.54E-131972No hitNo description
Gene3DG3DSA:1.10.10.601.4E-172272IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141396.13e-45PREDICTED: homeobox-leucine zipper protein ATHB-14
RefseqXP_009143747.13e-45PREDICTED: homeobox-leucine zipper protein ATHB-14
SwissprotO042911e-43ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLM4DZH93e-45M4DZH9_BRARP; Uncharacterized protein
TrEMBLM4CMG03e-45M4CMG0_BRARP; Uncharacterized protein
STRINGBra021926.1-P8e-45(Brassica rapa)
STRINGBra005398.1-P8e-45(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1807459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.16e-45HD-ZIP family protein